Hi Stefan,
we can see that you really have a Netweaver system including ERP components:
[INITIAL_CVERS]
BI_CONT 747 0014
FINBASIS 736 0016
MDG_FND 731 0016
PI_BASIS 731 0017
SAP_ABA 731 0017
SAP_BASIS 731 0017
SAP_BS_FND 731 0016
SAP_BW 731 0017
SEM-BW 736 0016
ST-A/PI 01S_731 0000
ST-PI 2008_1_7000012
WEBCUIF 731 0016
Please check scenario b) of the solution part of note #1927083 (SAP-NetWeaver-Systeme mit SEM-BW). This note links to the document here: Special Cases in Installation and Update | SCN
Please check the chapters which are mentioned in that note, use CISI or change the system in LMDB and generate the stackfile again.
Best regards,
Andreas